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DERA deoxyribose-phosphate aldolase [ Sus scrofa (pig) ]

Gene ID: 100153841, updated on 17-Aug-2024

Summary

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Official Symbol
DERAprovided by VGNC
Official Full Name
deoxyribose-phosphate aldolaseprovided by VGNC
Primary source
VGNC:VGNC:87260
See related
Ensembl:ENSSSCG00000000599
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 13.5), spleen (RPKM 12.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See DERA in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (56590982..56706479, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (59878455..59995841, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene microsomal glutathione S-transferase 1 Neighboring gene solute carrier family 15 member 5 Neighboring gene serine/threonine kinase receptor associated protein Neighboring gene EGFR pathway substrate 8, signaling adaptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyribose-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deoxyribonucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deoxyribose-phosphate aldolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    56590982..56706479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005664048.3 → XP_005664105.1  deoxyribose-phosphate aldolase isoform X2

    UniProtKB/TrEMBL
    A0A4X1VA38
    Conserved Domains (1) summary
    cd00959
    Location:50 → 275
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

  2. XM_005664049.3 → XP_005664106.1  deoxyribose-phosphate aldolase isoform X3

    UniProtKB/TrEMBL
    A0A286ZVP4, A0A4X1V8Z7, A0A8D0P0N6
    Related
    ENSSSCP00000035715.1, ENSSSCT00000042388.3
    Conserved Domains (1) summary
    cd00959
    Location:50 → 242
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

  3. XM_001926178.7 → XP_001926213.3  deoxyribose-phosphate aldolase isoform X1

    UniProtKB/TrEMBL
    A0A4X1V969, A0A4X1VA38, A0A8D0P0J7, F1SQY2
    Related
    ENSSSCP00000000629.3, ENSSSCT00000000644.5
    Conserved Domains (1) summary
    cd00959
    Location:50 → 277
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

  4. XM_021092297.1 → XP_020947956.1  deoxyribose-phosphate aldolase isoform X4

    UniProtKB/TrEMBL
    A0A8D0P0N6
    Conserved Domains (1) summary
    cd00959
    Location:50 → 240
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family
Nucleotide Protein
Heading Accession and Version

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