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CBR4 carbonyl reductase 4 [ Sus scrofa (pig) ]

Gene ID: 100153608, updated on 17-Aug-2024

Summary

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Official Symbol
CBR4provided by VGNC
Official Full Name
carbonyl reductase 4provided by VGNC
Primary source
VGNC:VGNC:86229
See related
Ensembl:ENSSSCG00000009717
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 11.0), liver (RPKM 10.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CBR4 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (20621960..20642351)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (21908782..21929179)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene NIMA related kinase 1 Neighboring gene 40S ribosomal protein S17 pseudogene Neighboring gene SH3 domain containing ring finger 1 Neighboring gene palladin, cytoskeletal associated protein Neighboring gene cytochrome c pseudogene Neighboring gene uncharacterized LOC110256756

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables quinone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbonyl reductase family member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    20621960..20642351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927085.6 → XP_001927120.1  carbonyl reductase family member 4 isoform X1

    UniProtKB/TrEMBL
    A0A4X1V1P4, A0A4X1V2R2, A0A5G2QL25, A0A8D0R983, A0A8D0XGB1, A0A8D1WSJ8, F1RIX8
    Related
    ENSSSCP00000010376.3, ENSSSCT00000010653.4
    Conserved Domains (2) summary
    PRK05653
    Location:1 → 235
    fabG; 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
    cl21454
    Location:3 → 233
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

  2. XM_021072857.1 → XP_020928516.1  carbonyl reductase family member 4 isoform X2

    Conserved Domains (1) summary
    cl25409
    Location:3 → 195
    SDR; Short-chain dehydrogenases/reductases (SDR)

  3. XM_005657284.3 → XP_005657341.2  carbonyl reductase family member 4 isoform X3

    UniProtKB/TrEMBL
    A0A4X1V072, A0A8D0R9E0
    Conserved Domains (1) summary
    cl25409
    Location:3 → 178
    SDR; Short-chain dehydrogenases/reductases (SDR)
Nucleotide Protein
Heading Accession and Version

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