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DDX18 DEAD-box helicase 18 [ Sus scrofa (pig) ]

Gene ID: 100153560, updated on 17-Aug-2024

Summary

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Official Symbol
DDX18provided by VGNC
Official Full Name
DEAD-box helicase 18provided by VGNC
Primary source
VGNC:VGNC:99709
See related
Ensembl:ENSSSCG00000015712
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 21.0), ovary (RPKM 16.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See DDX18 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (23425674..23442985)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (26805698..26823004)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene Krueppel-like factor 17 Neighboring gene dipeptidyl peptidase like 10 Neighboring gene 5-hydroxytryptamine receptor 5B Neighboring gene coiled-coil domain containing 93

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Cellular DEAD-box RNA helicase 18 (DDX18) Promotes the PRRSV Replication via Interaction with Virus nsp2 and nsp10. Jin H, et al. Virus Res, 2017 Jun 15. PMID 28648849
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    23425674..23442985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005654164.3 → XP_005654221.2  ATP-dependent RNA helicase DDX18

    UniProtKB/TrEMBL
    A0A0B8S095, A0A4X1SNX3, A0A8D0LRH2, A0A8D1BMS4, I3L7B7
    Related
    ENSSSCP00000019922.2, ENSSSCT00000025125.3
    Conserved Domains (1) summary
    COG0513
    Location:262 → 706
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
Nucleotide Protein Strain
Heading Accession and Version

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