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MPZL1 myelin protein zero like 1 [ Sus scrofa (pig) ]

Gene ID: 100153553, updated on 17-Aug-2024

Summary

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Official Symbol
MPZL1provided by VGNC
Official Full Name
myelin protein zero like 1provided by VGNC
Primary source
VGNC:VGNC:90335
See related
Ensembl:ENSSSCG00000006306
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 27.8), kidney (RPKM 18.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MPZL1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (83235712..83309620, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (90911481..90985387, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene microRNA mir-9810 Neighboring gene mitochondrial pyruvate carrier 2 Neighboring gene adenylate cyclase 10 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene transfer RNA proline (anticodon CGG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myelin protein zero-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    83235712..83309620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013996806.2 → XP_013852260.1  myelin protein zero-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A5G2QDJ9, A0A8D1NZN6, A0A8D1T7R5
    Related
    ENSSSCP00000060130.1, ENSSSCT00000071261.1
    Conserved Domains (2) summary
    cd05715
    Location:39 → 154
    Ig_P0-like; Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins
    smart00410
    Location:43 → 154
    IG_like; Immunoglobulin like

  2. XM_005663141.3 → XP_005663198.1  myelin protein zero-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1V924, A0A8D0MUI3, A0A8D0RZN4
    Conserved Domains (3) summary
    cd05715
    Location:39 → 154
    Ig_P0-like; Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins
    smart00410
    Location:43 → 154
    IG_like; Immunoglobulin like
    pfam13163
    Location:1 → 31
    DUF3999; Protein of unknown function (DUF3999)

RNA

  1. XR_002343361.1 RNA Sequence

    Related
    ENSSSCT00000006911.5
Nucleotide Protein
Heading Accession and Version

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