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GPD1 glycerol-3-phosphate dehydrogenase 1 [ Sus scrofa (pig) ]

Gene ID: 100153250, updated on 17-Aug-2024

Summary

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Official Symbol
GPD1provided by VGNC
Official Full Name
glycerol-3-phosphate dehydrogenase 1provided by VGNC
Primary source
VGNC:VGNC:88583
See related
Ensembl:ENSSSCG00000000214
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
cGPD
Expression
Broad expression in longissimus dorsi muscle (RPKM 127.6), subcutaneous adipose (RPKM 90.1) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See GPD1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (16008179..16021676)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (16330841..16334498, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene acid sensing ion channel subunit 1 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 Neighboring gene uncharacterized LOC102163508 Neighboring gene cytochrome c oxidase assembly protein COX14 Neighboring gene ceramide synthase 5 Neighboring gene LIM domain and actin binding 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the pig GPD1 gene is regulated negatively by C/EBP beta in cultured kidney cells
    Title: CCAAT/enhancer binding protein-beta negatively regulates the expression of glycerol-3-phosphate dehydrogenase 1 in pig PK-15 cells.
  2. The full-length genomic sequence of porcine GPD1 gene including promoter region, is reported.
    Title: Molecular characteristics and expression profiles of glycerol-3-phosphate dehydrogenase 1 (GPD1) gene in pig.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADH oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerol-3-phosphate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of glycerol-3-phosphate dehydrogenase (FAD) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic
Names
cytosolic glycerol-3-phosphate dehydrogenase
glycerol-3-phosphate dehydrogenase 1 (soluble)
NP_001177169.1
XP_020946577.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190240.1 → NP_001177169.1  glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

    Status: PROVISIONAL

    Source sequence(s)
    AK232843
    UniProtKB/TrEMBL
    A0A287BDV9, A0A4X1WCQ0, A0A8D0QAV5, A0A8D1GPN9
    Related
    ENSSSCP00000054712.2, ENSSSCT00000040822.3
    Conserved Domains (1) summary
    TIGR03376
    Location:5 → 342
    glycerol3P_DH; glycerol-3-phosphate dehydrogenase (NAD(+))

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    16008179..16021676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021090918.1 → XP_020946577.1  glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic isoform X1

    UniProtKB/TrEMBL
    A0A287BDV9, A0A4X1WCQ0, A0A8D0QAV5, A0A8D1GPN9
    Related
    ENSSSCP00000031183.2, ENSSSCT00000048306.2
    Conserved Domains (1) summary
    TIGR03376
    Location:5 → 342
    glycerol3P_DH; glycerol-3-phosphate dehydrogenase (NAD(+))
Nucleotide Protein
Heading Accession and Version

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