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KDSR 3-ketodihydrosphingosine reductase [ Sus scrofa (pig) ]

Gene ID: 100152988, updated on 17-Aug-2024

Summary

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Official Symbol
KDSRprovided by VGNC
Official Full Name
3-ketodihydrosphingosine reductaseprovided by VGNC
Primary source
VGNC:VGNC:108157
See related
Ensembl:ENSSSCG00000025744
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 7.2), kidney (RPKM 7.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (158288544..158329898)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (175775310..175822928)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene serpin family B member 5 Neighboring gene vacuolar protein sorting 4 homolog B Neighboring gene BCL2 apoptosis regulator Neighboring gene uncharacterized LOC110261644 Neighboring gene uncharacterized LOC110261643 Neighboring gene uncharacterized LOC106506858

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-dehydrosphinganine reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3-keto-sphinganine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-ketodihydrosphingosine reductase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    158288544..158329898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001925913.6 → XP_001925948.1  3-ketodihydrosphingosine reductase

    UniProtKB/TrEMBL
    A0A287A8D8, A0A4X1TPM8, A0A8D1GFC7, F1SMW5
    Related
    ENSSSCP00000019781.1, ENSSSCT00000031522.3
    Conserved Domains (2) summary
    cd08939
    Location:32 → 268
    KDSR-like_SDR_c; 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR
    pfam00106
    Location:34 → 232
    adh_short; short chain dehydrogenase
Nucleotide Protein
Heading Accession and Version

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