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GTDC1 glycosyltransferase like domain containing 1 [ Sus scrofa (pig) ]

Gene ID: 100152895, updated on 17-Aug-2024

Summary

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Official Symbol
GTDC1provided by VGNC
Official Full Name
glycosyltransferase like domain containing 1provided by VGNC
Primary source
VGNC:VGNC:95955
See related
Ensembl:ENSSSCG00000015670
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 1.4), kidney (RPKM 1.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
21
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (7685969..8162784)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (8377968..8636346)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257199 Neighboring gene zinc finger E-box binding homeobox 2 Neighboring gene uncharacterized LOC106504203 Neighboring gene uncharacterized LOC110256945 Neighboring gene uncharacterized LOC106508109 Neighboring gene uncharacterized LOC110256946 Neighboring gene developmental pluripotency-associated 5 protein-like Neighboring gene uncharacterized LOC110257185 Neighboring gene Rho GTPase activating protein 15 Neighboring gene uncharacterized LOC110257184

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycosyltransferase-like domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    7685969..8162784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021074849.1 → XP_020930508.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  2. XM_021074845.1 → XP_020930504.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  3. XM_021074840.1 → XP_020930499.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  4. XM_021074857.1 → XP_020930516.1  glycosyltransferase-like domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A4X1TCU6, A0A8D1N0R4, F1S0H4
    Related
    ENSSSCP00000016614.4, ENSSSCT00000017069.5
    Conserved Domains (1) summary
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  5. XM_021074836.1 → XP_020930495.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  6. XM_021074837.1 → XP_020930496.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  7. XM_021074838.1 → XP_020930497.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  8. XM_021074851.1 → XP_020930510.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  9. XM_021074858.1 → XP_020930517.1  glycosyltransferase-like domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A4X1TCU6, A0A8D1N0R4, F1S0H4
    Conserved Domains (1) summary
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  10. XM_021074859.1 → XP_020930518.1  glycosyltransferase-like domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A4X1TCU6, A0A8D1N0R4, F1S0H4
    Conserved Domains (1) summary
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  11. XM_021074852.1 → XP_020930511.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1TAV8
    Conserved Domains (2) summary
    COG0438
    Location:279 → 420
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  12. XM_021074860.1 → XP_020930519.1  glycosyltransferase-like domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A4X1TCU6, A0A8D1N0R4, F1S0H4
    Conserved Domains (1) summary
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  13. XM_021074853.1 → XP_020930512.1  glycosyltransferase-like domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1TET4, A0A8D1MZH0
    Conserved Domains (2) summary
    COG0438
    Location:279 → 420
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  14. XM_021074855.1 → XP_020930514.1  glycosyltransferase-like domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A4X1TCU6, A0A8D1N0R4, F1S0H4
    Conserved Domains (1) summary
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  15. XM_021074854.1 → XP_020930513.1  glycosyltransferase-like domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A4X1TAV8
    Conserved Domains (2) summary
    COG0438
    Location:279 → 420
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  16. XM_021074848.1 → XP_020930507.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  17. XM_021074846.1 → XP_020930505.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  18. XM_021074847.1 → XP_020930506.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  19. XM_021074850.1 → XP_020930509.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  20. XM_021074844.1 → XP_020930503.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  21. XM_021074839.1 → XP_020930498.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  22. XM_021074842.1 → XP_020930501.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  23. XM_021074843.1 → XP_020930502.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

  24. XM_021074841.1 → XP_020930500.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TDR5, A0A8D1XLN7
    Conserved Domains (2) summary
    COG0438
    Location:279 → 443
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:2 → 164
    DUF3524; Domain of unknown function (DUF3524)

RNA

  1. XR_002339027.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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