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VNN3 vanin 3 [ Sus scrofa (pig) ]

Gene ID: 100152784, updated on 17-Aug-2024

Summary

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Official Symbol
VNN3provided by VGNC
Official Full Name
vanin 3provided by VGNC
Primary source
VGNC:VGNC:103202
See related
Ensembl:ENSSSCG00000004180
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in liver (RPKM 34.8) and mixtures (RPKM 13.7) See more
Orthologs
human all
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Genomic context

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See VNN3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (30981596..30993259)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (34501330..34512997)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene solute carrier family 18 member B1 Neighboring gene vanin 2 Neighboring gene vanin 1 Neighboring gene trace amine associated receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vascular non-inflammatory molecule 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    30981596..30993259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001925456.5 → XP_001925491.1  vascular non-inflammatory molecule 3 isoform X1

    UniProtKB/TrEMBL
    A0A480S791, A0A481A3H9, A0A4X1V6L4, A0A8D0QGW3, A0A8D2BTW0, F1S3Q8
    Related
    ENSSSCP00000004513.3, ENSSSCT00000004619.5
    Conserved Domains (1) summary
    cd07567
    Location:26 → 330
    biotinidase_like; biotinidase and vanins (class 4 nitrilases)

  2. XM_013988285.2 → XP_013843739.1  vascular non-inflammatory molecule 3 isoform X2

    Conserved Domains (1) summary
    cl11424
    Location:1 → 72
    nitrilase; Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials