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UGCG UDP-glucose ceramide glucosyltransferase [ Sus scrofa (pig) ]

Gene ID: 100152737, updated on 17-Aug-2024

Summary

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Official Symbol
UGCGprovided by VGNC
Official Full Name
UDP-glucose ceramide glucosyltransferaseprovided by VGNC
Primary source
VGNC:VGNC:94685
See related
Ensembl:ENSSSCG00000022780
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 9.1), lung (RPKM 6.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See UGCG in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (252651850..252690817)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (283440499..283479445)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106509234 Neighboring gene G protein subunit gamma 10 Neighboring gene shortage in chiasmata 1 Neighboring gene sushi domain containing 1 Neighboring gene polypyrimidine tract binding protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucosylceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ceramide glucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    252651850..252690817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021067532.1 → XP_020923191.1  ceramide glucosyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A287B987, A0A4X1V6Q0, A0A8D0TTX2
    Conserved Domains (2) summary
    cd02520
    Location:51 → 246
    Glucosylceramide_synthase; Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis
    COG1215
    Location:1 → 335
    BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]

  2. XM_001925267.7 → XP_001925302.2  ceramide glucosyltransferase isoform X1

    See identical proteins and their annotated locations for XP_001925302.2

    UniProtKB/TrEMBL
    A0A4X1V638, A0A8D0TTX2, I3LPG3
    Related
    ENSSSCP00000025990.1, ENSSSCT00000024726.3
    Conserved Domains (2) summary
    cd02520
    Location:51 → 280
    Glucosylceramide_synthase; Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis
    pfam13641
    Location:51 → 276
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein Strain
Heading Accession and Version

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