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SULF2 sulfatase 2 [ Sus scrofa (pig) ]

Gene ID: 100152351, updated on 17-Aug-2024

Summary

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Official Symbol
SULF2provided by VGNC
Official Full Name
sulfatase 2provided by VGNC
Primary source
VGNC:VGNC:95938
See related
Ensembl:ENSSSCG00000007456
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 41.2), kidney (RPKM 15.2) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SULF2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
22
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (49663721..49805118, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (55891507..56010288, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene zinc finger MYND-type containing 8 Neighboring gene uncharacterized LOC106506709 Neighboring gene nuclear receptor coactivator 3 Neighboring gene uncharacterized LOC110257436 Neighboring gene uncharacterized LOC106508181

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine-6-sulfatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycosaminoglycan binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
extracellular sulfatase Sulf-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    49663721..49805118 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021077818.1 → XP_020933477.1  extracellular sulfatase Sulf-2 isoform X2

    UniProtKB/TrEMBL
    A0A287AD18, A0A8D1BQJ1, A0A8D1UMC8
    Related
    ENSSSCP00000041863.2, ENSSSCT00000043968.2
    Conserved Domains (3) summary
    cd16147
    Location:43 → 385
    G6S; glucosamine (N-acetyl)-6-sulfatase(G6S, GNS) AND sulfatase 1(SULF1)
    pfam12548
    Location:530 → 657
    DUF3740; Sulfatase protein
    cl23718
    Location:744 → 793
    ALP_like; alkaline phosphatases and sulfatases

  2. XM_021077816.1 → XP_020933475.1  extracellular sulfatase Sulf-2 isoform X1

    UniProtKB/TrEMBL
    A0A286ZLC5, A0A8D0V566, A0A8D2BBY0
    Related
    ENSSSCP00000032370.1, ENSSSCT00000055233.2
    Conserved Domains (3) summary
    cd16147
    Location:43 → 385
    G6S; glucosamine (N-acetyl)-6-sulfatase(G6S, GNS) AND sulfatase 1(SULF1)
    pfam12548
    Location:530 → 657
    DUF3740; Sulfatase protein
    cl23718
    Location:744 → 793
    ALP_like; alkaline phosphatases and sulfatases

  3. XM_021077817.1 → XP_020933476.1  extracellular sulfatase Sulf-2 isoform X1

    UniProtKB/TrEMBL
    A0A286ZLC5, A0A8D0V566, A0A8D2BBY0
    Conserved Domains (3) summary
    cd16147
    Location:43 → 385
    G6S; glucosamine (N-acetyl)-6-sulfatase(G6S, GNS) AND sulfatase 1(SULF1)
    pfam12548
    Location:530 → 657
    DUF3740; Sulfatase protein
    cl23718
    Location:744 → 793
    ALP_like; alkaline phosphatases and sulfatases
Nucleotide Protein Strain
Heading Accession and Version

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