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BLNK B cell linker [ Sus scrofa (pig) ]

Gene ID: 100152350, updated on 17-Aug-2024

Summary

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Official Symbol
BLNKprovided by VGNC
Official Full Name
B cell linkerprovided by VGNC
Primary source
VGNC:VGNC:85829
See related
Ensembl:ENSSSCG00000010504
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 24.2), lung (RPKM 9.3) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See BLNK in Genome Data Viewer
Location:
chromosome: 14
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (107630477..107715421, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (117265086..117349989, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene coiled-coil and C2 domain containing 2B Neighboring gene uncharacterized LOC110256636 Neighboring gene cyclin J Neighboring gene zinc finger protein 518A Neighboring gene DNA nucleotidylexotransferase Neighboring gene oligodendrocytic myelin paranodal and inner loop protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B-cell linker protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    107630477..107715421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001928233.5 → XP_001928268.1  B-cell linker protein

    See identical proteins and their annotated locations for XP_001928268.1

    UniProtKB/TrEMBL
    A0A0B8S0B4, A0A480F4D4, A0A4X1UGW7, A0A8D0MR69, A0A8D0W3D3
    Related
    ENSSSCP00000063770.1, ENSSSCT00000075374.1
    Conserved Domains (1) summary
    cd09929
    Location:343 → 461
    SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)
Nucleotide Protein Strain
Heading Accession and Version

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