U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TECTB tectorin beta [ Sus scrofa (pig) ]

Gene ID: 100152297, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
TECTBprovided by VGNC
Official Full Name
tectorin betaprovided by VGNC
Primary source
VGNC:VGNC:93860
See related
Ensembl:ENSSSCG00000010632
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in liver (RPKM 3.7), mixtures (RPKM 1.3) and 2 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TECTB in Genome Data Viewer
Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (122690796..122711124)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (133604709..133624167)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate acyltransferase, mitochondrial Neighboring gene uncharacterized LOC110255180 Neighboring gene uncharacterized LOC110256751 Neighboring gene uncharacterized LOC110256754 Neighboring gene guanylate cyclase 2G-like Neighboring gene acyl-CoA synthetase long chain family member 5 Neighboring gene zinc finger DHHC-type palmitoyltransferase 6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-tectorin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    122690796..122711124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005671464.3 → XP_005671521.1  beta-tectorin

    UniProtKB/TrEMBL
    A0A4X1TC81, A0A5G2QI38, A0A8D1A9U1, A0A8D1KCL3
    Related
    ENSSSCP00000063566.1, ENSSSCT00000073020.2
    Conserved Domains (2) summary
    smart00241
    Location:32 → 283
    ZP; Zona pellucida (ZP) domain
    pfam00100
    Location:140 → 280
    Zona_pellucida; Zona pellucida-like domain

RNA

  1. XR_002338682.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.