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RTN4R reticulon 4 receptor [ Sus scrofa (pig) ]

Gene ID: 100152289, updated on 8-Mar-2024

Summary

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Gene symbol
RTN4R
Gene description
reticulon 4 receptor
See related
Ensembl:ENSSSCG00000034656
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 2.7), mixtures (RPKM 1.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RTN4R in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (51579043..51603180, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (55216090..55240021, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 8 Neighboring gene coiled-coil domain containing 188 Neighboring gene proline dehydrogenase 1, mitochondrial Neighboring gene DiGeorge syndrome critical region gene 6 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reticulon-4 receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    51579043..51603180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005670955.3 → XP_005671012.1  reticulon-4 receptor

    UniProtKB/TrEMBL
    A0A286ZLA8, A0A4X1UR93, A0A8D1MJU1
    Related
    ENSSSCP00000032250.1, ENSSSCT00000046182.2
    Conserved Domains (4) summary
    cd00116
    Location:107 → 285
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:60 → 82
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:82 → 115
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:156 → 214
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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