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TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Sus scrofa (pig) ]

Gene ID: 100152211, updated on 17-Aug-2024

Summary

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Official Symbol
TMTC3provided by VGNC
Official Full Name
transmembrane O-mannosyltransferase targeting cadherins 3provided by VGNC
Primary source
VGNC:VGNC:94243
See related
Ensembl:ENSSSCG00000000927
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 5.2), lung (RPKM 4.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TMTC3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (94328452..94384266, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (99022882..99070980, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene KIT ligand Neighboring gene centrosomal protein 290 Neighboring gene chromosome 5 C12orf50 homolog Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 3
Names
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    94328452..94384266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021092778.1 → XP_020948437.1  transmembrane and TPR repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A481A5W2
    Conserved Domains (3) summary
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:438 → 808
    TPR_11; TPR repeat

  2. XM_021092779.1 → XP_020948438.1  transmembrane and TPR repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A481A5W2
    Related
    ENSSSCP00000031155.3, ENSSSCT00000061331.3
    Conserved Domains (3) summary
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:438 → 808
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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