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CHST3 carbohydrate sulfotransferase 3 [ Sus scrofa (pig) ]

Gene ID: 100151968, updated on 8-Mar-2024

Summary

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Official Symbol
CHST3provided by VGNC
Official Full Name
carbohydrate sulfotransferase 3provided by VGNC
Primary source
VGNC:VGNC:86679
See related
Ensembl:ENSSSCG00000023662
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in subcutaneous adipose (RPKM 7.0), ovary (RPKM 6.1) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CHST3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (74850931..74891527)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (80739187..80779620)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene cadherin related 23 Neighboring gene V-set immunoregulatory receptor Neighboring gene prosaposin Neighboring gene uncharacterized LOC106506033 Neighboring gene uncharacterized LOC110256608 Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chondroitin 6-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 3
Names
carbohydrate (chondroitin 6) sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    74850931..74891527
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001928637.4 → XP_001928672.1  carbohydrate sulfotransferase 3

    See identical proteins and their annotated locations for XP_001928672.1

    UniProtKB/TrEMBL
    A0A4X1T9E4, A0A8D1TAJ6, I3LU13
    Related
    ENSSSCP00000039434.1, ENSSSCT00000060717.3
    Conserved Domains (1) summary
    pfam00685
    Location:274 → 459
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_005671049.3 → XP_005671106.1  carbohydrate sulfotransferase 3

    See identical proteins and their annotated locations for XP_005671106.1

    UniProtKB/TrEMBL
    A0A4X1T9E4, A0A8D1TAJ6, I3LU13
    Conserved Domains (1) summary
    pfam00685
    Location:274 → 459
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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