U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PABPC1L poly(A) binding protein cytoplasmic 1 like [ Sus scrofa (pig) ]

Gene ID: 100151962, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
PABPC1Lprovided by VGNC
Official Full Name
poly(A) binding protein cytoplasmic 1 likeprovided by VGNC
Primary source
VGNC:VGNC:108728
See related
Ensembl:ENSSSCG00000007382
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Restricted expression toward ovary (RPKM 5.6) See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PABPC1L in Genome Data Viewer
Location:
chromosome: 17
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (47321259..47351905)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (52817476..52847301)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene regulating synaptic membrane exocytosis 4 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta Neighboring gene translocase of outer mitochondrial membrane 34 Neighboring gene serine/threonine kinase 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polyadenylate-binding protein 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    47321259..47351905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005672962.3 → XP_005673019.1  polyadenylate-binding protein 1-like isoform X1

    UniProtKB/TrEMBL
    A0A4X1TWX5, F1SDR6
    Related
    ENSSSCP00000007865.5, ENSSSCT00000008080.5
    Conserved Domains (7) summary
    TIGR01628
    Location:11 → 604
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PHA01732
    Location:409 → 493
    PHA01732; proline-rich protein
    cd12378
    Location:12 → 91
    RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins
    cd12379
    Location:97 → 172
    RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins
    cd12380
    Location:190 → 269
    RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins
    cd12381
    Location:293 → 370
    RRM4_I_PABPs; RNA recognition motif 4 in type I polyadenylate-binding proteins
    pfam00658
    Location:536 → 603
    PABP; Poly-adenylate binding protein, unique domain

  2. XM_013985397.2 → XP_013840851.1  polyadenylate-binding protein 1-like isoform X2

    UniProtKB/TrEMBL
    A0A8D0VP81, A0A8D1SIQ4
    Conserved Domains (5) summary
    cd12378
    Location:12 → 91
    RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins
    cd12379
    Location:97 → 172
    RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins
    cd12380
    Location:190 → 269
    RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins
    TIGR01661
    Location:9 → 263
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:293 → 324
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.