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TTC14 tetratricopeptide repeat domain 14 [ Sus scrofa (pig) ]

Gene ID: 100151821, updated on 17-Aug-2024

Summary

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Official Symbol
TTC14provided by VGNC
Official Full Name
tetratricopeptide repeat domain 14provided by VGNC
Primary source
VGNC:VGNC:94535
See related
Ensembl:ENSSSCG00000011767
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 9.9), spleen (RPKM 9.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TTC14 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (118614392..118638229)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (127816211..127826011)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 13 Neighboring gene uncharacterized LOC106505754 Neighboring gene peroxisomal biogenesis factor 5 like Neighboring gene uncharacterized LOC102167959 Neighboring gene coiled-coil domain 39 molecular ruler complex subunit Neighboring gene DnaJ heat shock protein family (Hsp40) member C19 Neighboring gene FMR1 autosomal homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    118614392..118638229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927185.5 → XP_001927220.2  tetratricopeptide repeat protein 14 isoform X1

    UniProtKB/TrEMBL
    A0A287AVL3, A0A4X1V1Q0, A0A4X1V457, A0A8D1A136, A0A8D1A1I9
    Related
    ENSSSCP00000047907.1, ENSSSCT00000060925.3
    Conserved Domains (3) summary
    smart00316
    Location:124 → 207
    S1; Ribosomal protein S1-like RNA-binding domain
    sd00006
    Location:307 → 335
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:307 → 372
    TPR_11; TPR repeat

  2. XM_013982230.2 → XP_013837684.1  tetratricopeptide repeat protein 14 isoform X2

    UniProtKB/TrEMBL
    A0A4X1V1Q0, A0A8D1A1I9
    Conserved Domains (3) summary
    smart00316
    Location:24 → 107
    S1; Ribosomal protein S1-like RNA-binding domain
    sd00006
    Location:207 → 235
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:207 → 272
    TPR_11; TPR repeat

RNA

  1. XR_002338123.1 RNA Sequence

  2. XR_002338122.1 RNA Sequence

    Related
    ENSSSCT00000079276.2

  3. XR_002338124.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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