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CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit X [ Sus scrofa (pig) ]

Gene ID: 100151784, updated on 17-Aug-2024

Summary

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Official Symbol
CLPXprovided by VGNC
Official Full Name
caseinolytic mitochondrial matrix peptidase chaperone subunit Xprovided by VGNC
Primary source
VGNC:VGNC:86780
See related
Ensembl:ENSSSCG00000004927
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in liver (RPKM 66.3), kidney (RPKM 46.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CLPX in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (163173887..163222067, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (180698287..180747236, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene ubiquitin associated protein 1 like Neighboring gene programmed cell death 7 Neighboring gene uncharacterized LOC106506879 Neighboring gene cartilage intermediate layer protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    163173887..163222067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021100084.1 → XP_020955743.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A0B8S0A1, A0A287ADU8, A0A8D0KAS4, A0A8D1YIY5, A0A8D2BM16
    Related
    ENSSSCP00000042066.1, ENSSSCT00000037417.2
    Conserved Domains (1) summary
    PRK05342
    Location:172 → 608
    clpX; ATP-dependent protease ATP-binding subunit ClpX; Provisional

  2. XM_021100081.1 → XP_020955740.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A4X1TJ71, A0A8D0UK16, A0A8D2BM16
    Conserved Domains (2) summary
    PRK05342
    Location:175 → 611
    clpX; ATP-dependent protease ATP-binding subunit ClpX; Provisional
    cl02609
    Location:107 → 135
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit

  3. XM_021100093.1 → XP_020955752.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A4X1TJ64, A0A8D0KLS5, A0A8D1MC60, F1SJL5
    Related
    ENSSSCP00000005302.2, ENSSSCT00000005437.5
    Conserved Domains (2) summary
    PRK05342
    Location:172 → 594
    clpX; ATP-dependent protease ATP-binding subunit ClpX; Provisional
    cl02609
    Location:104 → 132
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit

  4. XM_021100092.1 → XP_020955751.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A8D1MC60
    Conserved Domains (2) summary
    PRK05342
    Location:175 → 597
    clpX; ATP-dependent protease ATP-binding subunit ClpX; Provisional
    cl02609
    Location:107 → 135
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
Nucleotide Protein Strain
Heading Accession and Version

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