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zmp:0000000930 zmp:0000000930 [ Danio rerio (zebrafish) ]

Gene ID: 100151586, updated on 2-Nov-2024

Summary

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Official Symbol
zmp:0000000930provided by ZNC
Official Full Name
zmp:0000000930provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-933
See related
AllianceGenome:ZFIN:ZDB-GENE-130530-933
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human CCDC127 (coiled-coil domain containing 127). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See zmp:0000000930 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (43350502..43359986, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (43446738..43453168, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene WASH complex subunit 5 Neighboring gene proteasome 20S subunit alpha 2a Neighboring gene coiled-coil domain containing 127a Neighboring gene mitochondrial ribosomal protein L32 Neighboring gene ring finger protein 144B Neighboring gene uncharacterized LOC137487967

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
telethonin; zmp:0000000930

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    43350502..43359986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068214234.1 → XP_068070335.1  telethonin isoform X1

  2. XM_068214235.1 → XP_068070336.1  telethonin isoform X1

  3. XM_021467009.2 → XP_021322684.1  telethonin isoform X2

    UniProtKB/TrEMBL
    A0A8M9PDV4
    Conserved Domains (1) summary
    pfam09470
    Location:1 → 121
    Telethonin; Telethonin protein

  4. XM_068214236.1 → XP_068070337.1  telethonin isoform X2

  5. XM_021467006.2 → XP_021322681.1  telethonin isoform X1

    UniProtKB/TrEMBL
    A0A8M9P8J3
    Conserved Domains (1) summary
    pfam09470
    Location:27 → 159
    Telethonin; Telethonin protein

  6. XM_005173529.5 → XP_005173586.1  telethonin isoform X1

    See identical proteins and their annotated locations for XP_005173586.1

    UniProtKB/TrEMBL
    A0A8M9P8J3
    Conserved Domains (1) summary
    pfam09470
    Location:27 → 159
    Telethonin; Telethonin protein

  7. XM_021467008.2 → XP_021322683.1  telethonin isoform X1

    UniProtKB/TrEMBL
    A0A8M9P8J3
    Conserved Domains (1) summary
    pfam09470
    Location:27 → 159
    Telethonin; Telethonin protein
Nucleotide Protein Strain
Heading Accession and Version

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