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fibcd1a fibrinogen C domain containing 1a [ Danio rerio (zebrafish) ]

Gene ID: 100151577, updated on 2-Nov-2024

Summary

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Official Symbol
fibcd1aprovided by ZNC
Official Full Name
fibrinogen C domain containing 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-081105-148
See related
AllianceGenome:ZFIN:ZDB-GENE-081105-148
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkeyp-51b7.3
Summary
Orthologous to human FIBCD1 (fibrinogen C domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See fibcd1a in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (12446988..12669091, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (12413016..12631402, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene PHD finger protein 19 Neighboring gene TNF receptor-associated factor 1 Neighboring gene si:dkey-104n9.1 Neighboring gene solute carrier family 2 member 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
fibrinogen C domain-containing protein 1; fibrinogen C domain-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    12446988..12669091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166906.5 → XP_005166963.1  fibrinogen C domain-containing protein 1

    See identical proteins and their annotated locations for XP_005166963.1

    UniProtKB/TrEMBL
    A0A8M2BEE8
    Conserved Domains (1) summary
    cd00087
    Location:243 → 458
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
Nucleotide Protein Strain
Heading Accession and Version

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