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rnf11b ring finger protein 11b [ Danio rerio (zebrafish) ]

Gene ID: 100150568, updated on 2-Nov-2024

Summary

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Official Symbol
rnf11bprovided by ZNC
Official Full Name
ring finger protein 11bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050913-69
See related
Ensembl:ENSDARG00000040635 AllianceGenome:ZFIN:ZDB-GENE-050913-69
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:114095
Summary
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Is expressed in several structures, including eye; neural tube; optic cup; segmental plate; and somite. Orthologous to human RNF11 (ring finger protein 11). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See rnf11b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (16424722..16464453, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (16389010..16428741, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene Fas (TNFRSF6) associated factor 1 Neighboring gene cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) Neighboring gene tetratricopeptide repeat domain 39A Neighboring gene epidermal growth factor receptor pathway substrate 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Rnf11-like is a novel component of NF-κB signaling, governing the posterior patterning in the zebrafish embryos. Maddirevula S, et al. Biochem Biophys Res Commun, 2012 Jun 15. PMID 22609198
  2. Zebrafish dmrta2 regulates the expression of cdkn2c in spermatogenesis in the adult testis. Xu S, et al. Biol Reprod, 2013 Jan. PMID 23175770
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC114095

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RING finger protein 11b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128408.1 → NP_001121880.1  RING finger protein 11b

    Status: PROVISIONAL

    Source sequence(s)
    CT025878
    UniProtKB/TrEMBL
    A0A8M1NHK2, B0V2S5
    Related
    ENSDARP00000089462.4, ENSDART00000098691.5
    Conserved Domains (1) summary
    cd16468
    Location:98 → 140
    RING-H2_RNF11; RING finger, H2 subclass, found in RING finger protein 11 (RNF11) and similar proteins

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    16424722..16464453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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