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si:dkey-17o15.2 si:dkey-17o15.2 [ Danio rerio (zebrafish) ]

Gene ID: 100148319, updated on 2-Nov-2024

Summary

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Official Symbol
si:dkey-17o15.2provided by ZNC
Official Full Name
si:dkey-17o15.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4187
See related
Ensembl:ENSDARG00000103956 AllianceGenome:ZFIN:ZDB-GENE-030131-4187
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc79c08; wu:fc79c08
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Orthologous to human FYTTD1 (forty-two-three domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:dkey-17o15.2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (37277267..37287024)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (36677072..36686921)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene interleukin 13 receptor, alpha 2 Neighboring gene leucine-rich repeats and calponin homology (CH) domain containing 2 Neighboring gene zgc:163098 Neighboring gene WD repeat domain 44

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nuclear speck IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein si:dkey-17o15.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    37277267..37287024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476552.2 → XP_021332227.1  uncharacterized protein si:dkey-17o15.2

    UniProtKB/TrEMBL
    A0A0R4IAX2, A0A8M9PK10
    Related
    ENSDARP00000129968.1, ENSDART00000159402.2
    Conserved Domains (1) summary
    pfam07078
    Location:23 → 251
    FYTT; Forty-two-three protein

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394595.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    521506..531263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471638.2 → XP_021327313.1  uncharacterized protein si:dkey-17o15.2

    UniProtKB/TrEMBL
    A0A0R4IAX2, A0A8M9PK10
    Conserved Domains (1) summary
    pfam07078
    Location:23 → 251
    FYTT; Forty-two-three protein

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395241.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    155512..163831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001923764.6 → XP_001923799.3  uncharacterized protein si:dkey-17o15.2

    UniProtKB/TrEMBL
    A0A8M1QKY3
    Conserved Domains (1) summary
    pfam07078
    Location:23 → 251
    FYTT; Forty-two-three protein

Reference GRCz11 ALT_DRER_TU_3

Genomic

  1. NW_018395375.1 Reference GRCz11 ALT_DRER_TU_3

    Range
    169012..180273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474592.2 → XP_021330267.1  uncharacterized protein si:dkey-17o15.2

    UniProtKB/TrEMBL
    A0A8M9PGA0
    Conserved Domains (1) summary
    pfam07078
    Location:23 → 251
    FYTT; Forty-two-three protein
Nucleotide Protein
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