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SLC25A20 solute carrier family 25 member 20 [ Ovis aries (sheep) ]

Gene ID: 100147786, updated on 10-Oct-2024

Summary

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Gene symbol
SLC25A20
Gene description
solute carrier family 25 member 20
See related
EnsemblRapid:ENSOARG00020022821
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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See SLC25A20 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 19 NC_056072.1 (51090363..51128262)

Chromosome 19 - NC_056072.1Genomic Context describing neighboring genes Neighboring gene prolyl 4-hydroxylase, transmembrane Neighboring gene ariadne RBR E3 ubiquitin protein ligase 2 Neighboring gene adenosine 5'-monophosphoramidase HINT1-like Neighboring gene large ribosomal subunit protein eL39-like Neighboring gene protein kinase cAMP-dependent type II regulatory subunit alpha Neighboring gene inositol hexakisphosphate kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056072.1 Chromosome 19 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome resource to address mechanisms of developmental programming: determination of the fetal sheep heart transcriptome. Cox LA, et al. J Physiol, 2012 Jun 15. PMID 22508961, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables low-density lipoprotein particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron projection development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier protein
Names
solute carrier family 25 (carnitine/acylcarnitine translocase), member 20
NP_001120749.1
XP_042091644.1
XP_060257999.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127277.1 → NP_001120749.1  mitochondrial carnitine/acylcarnitine carrier protein

    See identical proteins and their annotated locations for NP_001120749.1

    Status: PROVISIONAL

    Source sequence(s)
    EU626214
    UniProtKB/TrEMBL
    A0A6P3CWW3, B2MVX5, W5Q3I3
    Related
    ENSOARP00020035290.1, ENSOART00020076370.1
    Conserved Domains (2) summary
    PTZ00169
    Location:11 → 277
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    pfam00153
    Location:106 → 198
    Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056072.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    51090363..51128262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060402016.1 → XP_060257999.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X1

  2. XM_042235710.1 → XP_042091644.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X2

    UniProtKB/TrEMBL
    W5Q3I3
    Related
    ENSOARP00020029292.2, ENSOART00020035454.2
    Conserved Domains (1) summary
    PTZ00169
    Location:11 → 277
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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