U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GAD2 glutamate decarboxylase isoform2 [ Solanum lycopersicum (tomato) ]

Gene ID: 100147722, updated on 1-Nov-2024

Summary

Go to the top of the page Help
Gene symbol
GAD2
Gene description
glutamate decarboxylase isoform2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
LeGAD2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GAD2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 11 NC_090810.1 (5483458..5490270, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 11 NC_015448.3 (4848801..4855528, complement)

Chromosome 11 - NC_090810.1Genomic Context describing neighboring genes Neighboring gene ubiquitin domain-containing protein 7SL RNA1-like Neighboring gene transmembrane 9 superfamily member 3 Neighboring gene isocitrate dehydrogenase [NADP] Neighboring gene homeobox-leucine zipper protein ROC8-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Both SlGAD2 and SlGAD3 expression are crucial for gamma-aminobutyric acid (GABA)biosynthesis in tomato fruits.
    Title: Tomato Glutamate Decarboxylase Genes SlGAD2 and SlGAD3 Play Key Roles in Regulating γ-Aminobutyric Acid Levels in Tomato (Solanum lycopersicum).
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutamate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutamate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glutamate decarboxylase isoform2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246893.1 → NP_001233822.1  glutamate decarboxylase isoform2

    See identical proteins and their annotated locations for NP_001233822.1

    Status: PROVISIONAL

    Source sequence(s)
    AB359914
    UniProtKB/TrEMBL
    B1Q3F1
    Conserved Domains (1) summary
    TIGR01788
    Location:16 → 445
    Glu-decarb-GAD; glutamate decarboxylase

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090810.1 Reference SLM_r2.1 Primary Assembly

    Range
    5483458..5490270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.