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LYPD5 LY6/PLAUR domain containing 5 [ Equus caballus (horse) ]

Gene ID: 100147197, updated on 17-Aug-2024

Summary

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Official Symbol
LYPD5provided by VGNC
Official Full Name
LY6/PLAUR domain containing 5provided by VGNC
Primary source
VGNC:VGNC:112230
See related
Ensembl:ENSECAG00000037472
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 10 NC_009153.3 (14908190..14912903, complement)

Chromosome 10 - NC_009153.3Genomic Context describing neighboring genes Neighboring gene SMG9 nonsense mediated mRNA decay factor Neighboring gene potassium calcium-activated channel subfamily N member 4 Neighboring gene vomeronasal 1 receptor equCabV1R-ps906 pseudogene Neighboring gene zinc finger protein 283

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009153.3 Chromosome 10 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ly6/PLAUR domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009153.3 Reference EquCab3.0 Primary Assembly

    Range
    14908190..14912903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023649819.1 → XP_023505587.1  ly6/PLAUR domain-containing protein 5

    UniProtKB/TrEMBL
    A0A3Q2L1X6, A0A9L0TGV4
    Related
    ENSECAP00000031437.1, ENSECAT00000030784.3
    Conserved Domains (1) summary
    pfam00021
    Location:141 → 220
    UPAR_LY6; u-PAR/Ly-6 domain
Nucleotide Protein
Heading Accession and Version

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