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PGGHG protein-glucosylgalactosylhydroxylysine glucosidase [ Equus caballus (horse) ]

Gene ID: 100146757, updated on 17-Aug-2024

Summary

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Official Symbol
PGGHGprovided by VGNC
Official Full Name
protein-glucosylgalactosylhydroxylysine glucosidaseprovided by VGNC
Primary source
VGNC:VGNC:69325
See related
Ensembl:ENSECAG00000002017
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See PGGHG in Genome Data Viewer
Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 12 NC_009155.3 (36880842..36888064, complement)

Chromosome 12 - NC_009155.3Genomic Context describing neighboring genes Neighboring gene interferon-induced transmembrane protein 1 Neighboring gene interferon induced transmembrane protein 5 Neighboring gene NLR family pyrin domain containing 6 Neighboring gene uncharacterized LOC106781507 Neighboring gene proteasome 26S subunit, non-ATPase 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009155.3 Chromosome 12 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-glucosylgalactosylhydroxylysine glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein-glucosylgalactosylhydroxylysine glucosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009155.3 Reference EquCab3.0 Primary Assembly

    Range
    36880842..36888064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023654865.1 → XP_023510633.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X3

    UniProtKB/TrEMBL
    F6TSW6
    Conserved Domains (2) summary
    COG1554
    Location:209 → 642
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]
    pfam10222
    Location:16 → 297
    DUF2152; Uncharacterized conserved protein (DUF2152)

  2. XM_023654866.1 → XP_023510634.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X4

    UniProtKB/TrEMBL
    F6TSW6
    Conserved Domains (2) summary
    COG1554
    Location:209 → 617
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]
    pfam10222
    Location:16 → 297
    DUF2152; Uncharacterized conserved protein (DUF2152)

  3. XM_023654863.1 → XP_023510631.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X1

    UniProtKB/TrEMBL
    A0A3Q2KSQ3, F6TSW6
    Related
    ENSECAP00000026866.2, ENSECAT00000061650.2
    Conserved Domains (2) summary
    COG1554
    Location:209 → 686
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]
    pfam10222
    Location:16 → 297
    DUF2152; Uncharacterized conserved protein (DUF2152)

  4. XM_023654868.1 → XP_023510636.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X6

    UniProtKB/TrEMBL
    F6TSW6
    Conserved Domains (2) summary
    COG1554
    Location:209 → 577
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]
    pfam10222
    Location:16 → 297
    DUF2152; Uncharacterized conserved protein (DUF2152)

  5. XM_023654864.1 → XP_023510632.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X2

    UniProtKB/TrEMBL
    F6TSW6
    Related
    ENSECAP00000001397.3, ENSECAT00000001931.3
    Conserved Domains (2) summary
    COG1554
    Location:209 → 661
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]
    pfam10222
    Location:16 → 297
    DUF2152; Uncharacterized conserved protein (DUF2152)

  6. XM_023654867.1 → XP_023510635.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X5

    UniProtKB/TrEMBL
    F6TSW6
    Conserved Domains (2) summary
    COG1554
    Location:209 → 629
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]
    pfam10222
    Location:16 → 297
    DUF2152; Uncharacterized conserved protein (DUF2152)

  7. XM_023654869.1 → XP_023510637.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X7

    Conserved Domains (2) summary
    COG1554
    Location:209 → 555
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]
    pfam10222
    Location:16 → 297
    DUF2152; Uncharacterized conserved protein (DUF2152)

RNA

  1. XR_002812065.1 RNA Sequence

  2. XR_002812066.1 RNA Sequence

Nucleotide Protein
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