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CD248 CD248 molecule [ Equus caballus (horse) ]

Gene ID: 100146570, updated on 15-Aug-2024

Summary

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Gene symbol
CD248
Gene description
CD248 molecule
See related
Ensembl:ENSECAG00000030452
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CD248 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 12 NC_009155.3 (30031755..30034396, complement)

Chromosome 12 - NC_009155.3Genomic Context describing neighboring genes Neighboring gene Yip1 interacting factor homolog A, membrane trafficking protein Neighboring gene transmembrane protein 151A Neighboring gene microRNA mir-9122 Neighboring gene BRMS1 transcriptional repressor and anoikis regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009155.3 Chromosome 12 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endosialin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009155.3 Reference EquCab3.0 Primary Assembly

    Range
    30031755..30034396 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023654497.1 → XP_023510265.1  endosialin

    UniProtKB/TrEMBL
    A0A3Q2HA78, A0A9L0RQ59
    Related
    ENSECAP00000030939.1, ENSECAT00000065371.2
    Conserved Domains (4) summary
    cd03600
    Location:29 → 160
    CLECT_thrombomodulin_like; C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR
    smart00179
    Location:312 → 350
    EGF_CA; Calcium-binding EGF-like domain
    pfam14670
    Location:235 → 271
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl26464
    Location:393 → 691
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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