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alg13 ALG13 UDP-N-acetylglucosaminyltransferase subunit [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145625, updated on 17-Aug-2024

Summary

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Official Symbol
alg13provided by Xenbase
Official Full Name
ALG13 UDP-N-acetylglucosaminyltransferase subunitprovided by Xenbase
Primary source
Xenbase:XB-GENE-22172432
See related
Ensembl:ENSXETG00000030653
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
otud4
Orthologs
human mouse all
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Genomic context

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See alg13 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
26
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (51797212..51852988)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (30662590..30718604)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene calpain 6 Neighboring gene doublecortin Neighboring gene serine rich and transmembrane domain containing 2 Neighboring gene transient receptor potential cation channel, subfamily C, member 5 Neighboring gene uncharacterized LOC116406563

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13
Names
OTU domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    51797212..51852988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004916844.4 → XP_004916901.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X2

    UniProtKB/TrEMBL
    A0A8J0R3U8
    Conserved Domains (2) summary
    cd04508
    Location:299 → 347
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:36 → 116
    OTU; OTU-like cysteine protease

  2. XM_002938789.5 → XP_002938835.2  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1

    UniProtKB/TrEMBL
    A0A6I8PPS5
    Related
    ENSXETP00000061466.2, ENSXETT00000061946.3
    Conserved Domains (2) summary
    cd04508
    Location:299 → 347
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:36 → 116
    OTU; OTU-like cysteine protease
Nucleotide Protein Strain
Heading Accession and Version

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