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mgat4d alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase D [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145594, updated on 4-Nov-2024

Summary

Official Symbol
mgat4dprovided by Xenbase
Official Full Name
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase Dprovided by Xenbase
Primary source
Xenbase:XB-GENE-5866431
See related
Ensembl:ENSXETG00000014915 AllianceGenome:Xenbase:XB-GENE-5866431
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
mgat4a
Summary
Orthologous to human MGAT4D (MGAT4 family member D). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See mgat4d in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (60540555..60598956)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (51143812..51202142)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene uncoupling protein 1 Neighboring gene ELMO/CED-12 domain containing 2 Neighboring gene calmegin Neighboring gene short coiled-coil protein

Genomic regions, transcripts, and products

General protein information

Preferred Names
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4D
Names
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A
mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
NP_001120478.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127006.1NP_001120478.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4D

    See identical proteins and their annotated locations for NP_001120478.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161346
    UniProtKB/TrEMBL
    A0A6I8S6P7, A0A803KIP8
    Related
    ENSXETP00000032624.4, ENSXETT00000032624.5
    Conserved Domains (1) summary
    pfam04666
    Location:102378
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    60540555..60598956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)