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XB5872720 uncharacterized XB5872720 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145503, updated on 4-Nov-2024

Summary

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Symbol
XB5872720provided by Xenbase
Full Name
uncharacterized XB5872720provided by Xenbase
Primary source
Xenbase:XB-GENE-5872721
See related
Ensembl:ENSXETG00000046802 AllianceGenome:Xenbase:XB-GENE-5872721
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable glycosyltransferase activity. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See XB5872720 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (5015850..5036456)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683569.1 (21114..41145)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized XB5907743 Neighboring gene beta-1,4-galactosyltransferase galt-1 Neighboring gene beta-1,4-galactosyltransferase galt-1 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100145503

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126947.1 → NP_001120419.1  uncharacterized protein LOC100145503

    See identical proteins and their annotated locations for NP_001120419.1

    Status: PREDICTED

    Source sequence(s)
    BC161168
    UniProtKB/TrEMBL
    A0A1B8XTE7, B1H2X6, F6Q3L5, F6QL62, L7MUI9
    Conserved Domains (1) summary
    pfam01697
    Location:165 → 417
    Glyco_transf_92; Glycosyltransferase family 92

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    5015850..5036456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012954303.2 → XP_012809757.2  uncharacterized protein LOC100145503 isoform X1

    UniProtKB/TrEMBL
    A0A1B8XTE7, A0A803KBH6
    Related
    ENSXETP00000115550.1, ENSXETT00000107823.1
    Conserved Domains (1) summary
    pfam01697
    Location:165 → 419
    Glyco_transf_92; Glycosyltransferase family 92

  2. XM_012954304.2 → XP_012809758.2  uncharacterized protein LOC100145503 isoform X1

    UniProtKB/TrEMBL
    A0A1B8XTE7, A0A803KBH6
    Related
    ENSXETP00000106936.1, ENSXETT00000113418.1
    Conserved Domains (1) summary
    pfam01697
    Location:165 → 419
    Glyco_transf_92; Glycosyltransferase family 92
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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