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gal3st4.6 galactose-3-O-sulfotransferase 4, gene 6 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145173, updated on 17-Aug-2024

Summary

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Official Symbol
gal3st4.6provided by Xenbase
Official Full Name
galactose-3-O-sulfotransferase 4, gene 6provided by Xenbase
Primary source
Xenbase:XB-GENE-22060537
See related
Ensembl:ENSXETG00000033044
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
gal3st4
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (144000667..144016947, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683390.1 (314694..332011)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene galactose-3-O-sulfotransferase 4, gene 3 Neighboring gene galactose-3-O-sulfotransferase 4, gene 4 Neighboring gene galactose-3-O-sulfotransferase 4, gene 5 Neighboring gene NXPE family member 3 Neighboring gene NXPE family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables galactosylceramide sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
galactose-3-O-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126666.1 → NP_001120138.1  galactose-3-O-sulfotransferase 4

    See identical proteins and their annotated locations for NP_001120138.1

    Status: PROVISIONAL

    Source sequence(s)
    BC159090
    UniProtKB/TrEMBL
    A0A1B8Y8Z3, B0JZ98, F7BSF5
    Related
    ENSXETP00000061622.3, ENSXETT00000061607.3
    Conserved Domains (1) summary
    cl22970
    Location:16 → 386
    Sulfotransfer_2; Sulfotransferase family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    144000667..144016947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012953354.2 → XP_012808808.2  galactose-3-O-sulfotransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A1B8Y8Z3, B0JZ98, F7BSF5
    Related
    ENSXETP00000107693.1, ENSXETT00000122055.1
    Conserved Domains (1) summary
    cl22970
    Location:16 → 386
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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