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b4galt7 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100144979, updated on 4-Nov-2024

Summary

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Official Symbol
b4galt7provided by Xenbase
Official Full Name
xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7provided by Xenbase
Primary source
Xenbase:XB-GENE-973272
See related
Ensembl:ENSXETG00000006736 AllianceGenome:Xenbase:XB-GENE-973272
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable glycosyltransferase activity and metal ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process and protein glycosylation. Predicted to be located in Golgi cisterna membrane and Golgi membrane. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome spondylodysplastic type 1. Orthologous to human B4GALT7 (beta-1,4-galactosyltransferase 7). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See b4galt7 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (47629541..47641175)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (38136288..38148195)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene lectin, mannose-binding 2 Neighboring gene transmembrane p24 trafficking protein 9 Neighboring gene empty spiracles homeobox 1 like Neighboring gene uncharacterized XB22062450

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 7
Names
xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
NP_001120017.1
XP_012813993.2
XP_012813994.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126545.1 → NP_001120017.1  beta-1,4-galactosyltransferase 7

    See identical proteins and their annotated locations for NP_001120017.1

    Status: PROVISIONAL

    Source sequence(s)
    BC158315
    UniProtKB/TrEMBL
    A0A6I8S3V1, B0BM74, F6V395, F6WCD7
    Related
    ENSXETP00000014720.3, ENSXETT00000014720.5
    Conserved Domains (1) summary
    cd00899
    Location:87 → 310
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    47629541..47641175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958540.2 → XP_012813994.1  beta-1,4-galactosyltransferase 7 isoform X2

    UniProtKB/TrEMBL
    A0A6I8S3V1, A0A803KF28
    Related
    ENSXETP00000118977.1, ENSXETT00000112418.1
    Conserved Domains (1) summary
    cd00899
    Location:83 → 306
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  2. XM_012958539.3 → XP_012813993.2  beta-1,4-galactosyltransferase 7 isoform X1

    UniProtKB/TrEMBL
    A0A6I8S3V1, A0A8J0SER5
    Related
    ENSXETP00000092710.2, ENSXETT00000092659.2
    Conserved Domains (1) summary
    cd00899
    Location:83 → 306
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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