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fabp1 fatty acid binding protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100144636, updated on 9-Dec-2024

Summary

Official Symbol
fabp1provided by Xenbase
Official Full Name
fatty acid binding protein 1provided by Xenbase
Primary source
Xenbase:XB-GENE-481608
See related
AllianceGenome:Xenbase:XB-GENE-481608
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fabp; fabpl; l-fabp
Summary
Predicted to enable fatty acid binding activity. Predicted to act upstream of or within fatty acid transport. Predicted to be located in cytoplasm. Orthologous to human FABP1 (fatty acid binding protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See fabp1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (18413253..18418126)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (15227573..15231880, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene forkhead box I3, gene 1 Neighboring gene threonine synthase-like 2 Neighboring gene SET and MYND domain containing 1 Neighboring gene lysine-rich coiled-coil 1

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables fatty acid binding IEA
Inferred from Electronic Annotation
more info
 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within fatty acid transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
fatty acid-binding protein, liver
Names
fatty acid binding protein 1, liver

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123411.1NP_001116883.1  fatty acid-binding protein, liver

    See identical proteins and their annotated locations for NP_001116883.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161795
    UniProtKB/TrEMBL
    B1WBL1, F6SCM6
    Conserved Domains (1) summary
    cd19444
    Location:2127
    FABP1; fatty acid-binding protein 1

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    18413253..18418126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)