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INPP5F inositol polyphosphate-5-phosphatase F [ Sus scrofa (pig) ]

Gene ID: 100144587, updated on 17-Aug-2024

Summary

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Official Symbol
INPP5Fprovided by VGNC
Official Full Name
inositol polyphosphate-5-phosphatase Fprovided by VGNC
Primary source
VGNC:VGNC:89145
See related
Ensembl:ENSSSCG00000010687
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 10.8), mixtures (RPKM 9.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See INPP5F in Genome Data Viewer
Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (129577594..129671541)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (141103045..141195778)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256777 Neighboring gene TIA1 cytotoxic granule associated RNA binding protein like 1 Neighboring gene BAG cochaperone 3 Neighboring gene minichromosome maintenance complex binding protein Neighboring gene metallothionein-1 pseudogene Neighboring gene SEC23 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Molecular characterization and association analysis with production traits of the porcine INPP5F gene. Zhou QY, et al. Mol Biol Rep, 2009 May. PMID 18551384
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-4-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of endocytic recycling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in clathrin-coated endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositide phosphatase SAC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    129577594..129671541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005671507.3 → XP_005671564.1  phosphatidylinositide phosphatase SAC2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SU21, A0A8D1EJ08, F1S414
    Related
    ENSSSCP00000011386.2, ENSSSCT00000011688.5
    Conserved Domains (2) summary
    pfam02383
    Location:50 → 415
    Syja_N; SacI homology domain
    pfam12456
    Location:595 → 697
    hSac2; Inositol phosphatase

  2. XM_013983807.2 → XP_013839261.1  phosphatidylinositide phosphatase SAC2 isoform X2

    UniProtKB/TrEMBL
    A0A287ATE9, A0A8D1I224, A0A8D1VLF2
    Related
    ENSSSCP00000047199.1, ENSSSCT00000048431.3
    Conserved Domains (2) summary
    pfam02383
    Location:50 → 415
    Syja_N; SacI homology domain
    pfam12456
    Location:595 → 673
    hSac2; Inositol phosphatase

RNA

  1. XR_002338746.1 RNA Sequence

  2. XR_002338745.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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