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Fng fringe [ Bombyx mori (domestic silkworm) ]

Gene ID: 100144549, updated on 10-May-2024

Summary

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Gene symbol
Fng
Gene description
fringe
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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See Fng in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 10 NC_085116.1 (12995164..13011842, complement)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 10 NC_051367.1 (12811870..12828548, complement)

Chromosome 10 - NC_085116.1Genomic Context describing neighboring genes Neighboring gene Kynurenine 3-monooxygenase cn Neighboring gene cathepsin L like protein Neighboring gene uncharacterized LOC134199548 Neighboring gene low density lipoprotein receptor-related protein-like protein Neighboring gene 15-hydroxyprostaglandin dehydrogenase [NAD(+)] Neighboring gene alcohol dehydrogenase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Positional cloning of a Bombyx wingless locus flugellos (fl) reveals a crucial role for fringe that is specific for wing morphogenesis. Sato K, et al. Genetics, 2008 Jun. PMID 18505883, Free PMC Article
  2. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  3. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123341.1 → NP_001116813.1  fringe

    See identical proteins and their annotated locations for NP_001116813.1

    Status: PROVISIONAL

    Source sequence(s)
    AB360592
    UniProtKB/TrEMBL
    B1B559
    Conserved Domains (1) summary
    pfam02434
    Location:64 → 310
    Fringe; Fringe-like

RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085116.1 Reference ASM3026992v2 Primary Assembly

    Range
    12995164..13011842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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