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PPT2 palmitoyl-protein thioesterase 2 [ Sus scrofa (pig) ]

Gene ID: 100144537, updated on 8-Mar-2024

Summary

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Gene symbol
PPT2
Gene description
palmitoyl-protein thioesterase 2
See related
Ensembl:ENSSSCG00000001433
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 10.0), ovary (RPKM 7.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PPT2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (24188335..24200707)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (28009030..28021533)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase like Neighboring gene proline rich transmembrane protein 1 Neighboring gene EGF like domain multiple 8 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables palmitoyl hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiolester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosomal thioesterase PPT2
NP_001116639.1
XP_005665878.1
XP_005665880.1
XP_013833107.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123167.1 → NP_001116639.1  lysosomal thioesterase PPT2 precursor

    See identical proteins and their annotated locations for NP_001116639.1

    Status: PROVISIONAL

    Source sequence(s)
    AL773562
    UniProtKB/TrEMBL
    A0A4X1V927, A0A8D1AMU8, A5A8Z8
    Related
    ENSSSCP00000029758.3, ENSSSCT00000035201.3
    Conserved Domains (2) summary
    pfam12697
    Location:46 → 255
    Abhydrolase_6; Alpha/beta hydrolase family
    cl21494
    Location:45 → 287
    Abhydrolase; alpha/beta hydrolases

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    24188335..24200707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013977653.2 → XP_013833107.1  lysosomal thioesterase PPT2 isoform X3

    UniProtKB/TrEMBL
    A5A8Z5
    Conserved Domains (1) summary
    cl21494
    Location:45 → 243
    Abhydrolase; alpha/beta hydrolases

  2. XM_005665823.3 → XP_005665880.1  lysosomal thioesterase PPT2 isoform X2

    UniProtKB/TrEMBL
    A0A4X1V927
    Conserved Domains (1) summary
    cl21494
    Location:45 → 251
    Abhydrolase; alpha/beta hydrolases

  3. XM_005665821.3 → XP_005665878.1  lysosomal thioesterase PPT2 isoform X1

    See identical proteins and their annotated locations for XP_005665878.1

    UniProtKB/TrEMBL
    A0A4X1V927, A0A8D1YAJ9, A5A8Z3
    Conserved Domains (1) summary
    cl21494
    Location:39 → 281
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein
Heading Accession and Version

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