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st3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100144348, updated on 8-Mar-2024

Summary

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Gene symbol
st3gal2
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 2
See related
EnsemblRapid:ENSORLG00000013421
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
siat5.2
Orthologs
human zebrafish all
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Genomic context

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See st3gal2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 6 NC_019864.2 (25035894..25096504, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 6 NC_019864.1 (20171646..20233345, complement)

Chromosome 6 - NC_019864.2Genomic Context describing neighboring genes Neighboring gene exosome component 6 Neighboring gene alanyl-tRNA synthetase 1 Neighboring gene splicing factor 3b, subunit 3 Neighboring gene interleukin 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The animal sialyltransferases and sialyltransferase-related genes: a phylogenetic approach. Harduin-Lepers A, et al. Glycobiology, 2005 Aug. PMID 15843597
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2
Names
alpha-2,3-sialyltransferase ST3Gal II
NP_001116376.1
XP_023811143.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001122904.1 → NP_001116376.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2

    See identical proteins and their annotated locations for NP_001116376.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ871409
    UniProtKB/TrEMBL
    A0A3P9L6Y9, H2ME26, Q5ND65
    Related
    ENSORLP00000016829.2, ENSORLT00000016830.3
    Conserved Domains (1) summary
    pfam00777
    Location:119 → 371
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019864.2 Reference ASM223467v1 Primary Assembly

    Range
    25035894..25096504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023955375.1 → XP_023811143.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A3P9L6Y9, H2ME26, Q5ND65
    Conserved Domains (1) summary
    pfam00777
    Location:119 → 371
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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