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IDH1 isocitrate dehydrogenase (NADP(+)) 1 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100141373, updated on 11-Apr-2024

Summary

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Gene symbol
IDH1
Gene description
isocitrate dehydrogenase (NADP(+)) 1
See related
EnsemblRapid:ENSLAFG00000016882
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See IDH1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 6 NC_087347.1 (37716005..37740644)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573423.1 (18392618..18417250)

Chromosome 6 - NC_087347.1Genomic Context describing neighboring genes Neighboring gene parathyroid hormone 2 receptor Neighboring gene phosphoinositide kinase, FYVE-type zinc finger containing Neighboring gene chromosome 6 C2orf80 homolog Neighboring gene gamma-crystallin B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Housekeeping genes for phylogenetic analysis of eutherian relationships. Kullberg M, et al. Mol Biol Evol, 2006 Aug. PMID 16751257

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADP metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isocitrate dehydrogenase [NADP] cytoplasmic
Names
isocitrate dehydrogenase (NADP(+)) 1, cytosolic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087347.1 Reference mLoxAfr1.hap2

    Range
    37716005..37740644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010602269.3 → XP_010600571.1  isocitrate dehydrogenase [NADP] cytoplasmic

    See identical proteins and their annotated locations for XP_010600571.1

    UniProtKB/TrEMBL
    G3THS8
    Conserved Domains (1) summary
    PTZ00435
    Location:4 → 411
    PTZ00435; isocitrate dehydrogenase; Provisional

  2. XM_003406095.4 → XP_003406143.1  isocitrate dehydrogenase [NADP] cytoplasmic

    See identical proteins and their annotated locations for XP_003406143.1

    UniProtKB/TrEMBL
    G3THS8
    Conserved Domains (1) summary
    PTZ00435
    Location:4 → 411
    PTZ00435; isocitrate dehydrogenase; Provisional

  3. XM_010602267.3 → XP_010600569.1  isocitrate dehydrogenase [NADP] cytoplasmic

    See identical proteins and their annotated locations for XP_010600569.1

    UniProtKB/TrEMBL
    G3THS8
    Related
    ENSLAFP00000014152.3, ENSLAFT00000016881.3
    Conserved Domains (1) summary
    PTZ00435
    Location:4 → 411
    PTZ00435; isocitrate dehydrogenase; Provisional
Nucleotide Protein
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