H2AZ1 H2A.Z variant histone 1 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: H2AZ1provided by VGNC
Official Full Name: H2A.Z variant histone 1provided by VGNC
Primary source: VGNC:VGNC:109805
See related: Ensembl:ENSSSCG00000009178
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as: H2A.Z; H2AFZ; H2A.Z-1
Expression: Ubiquitous expression in spleen (RPKM 153.4), lung (RPKM 103.9) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	8	NC_010450.4 (120563752..120566023)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	8	NC_010450.3 (129744062..129745412)

Chromosome 8 - NC_010450.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The study indicated the H2AFZ, RNF4 and NR4A1 loci were the potential molecular markers for improving the semen quality traits in boars.
Title: H2AFZ, RNF4 and NR4A1 loci are associated with boar semen quality by population association studies.

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General gene information

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Markers

MARC_6803-6804:992007476:3 (e-PCR)
- UniSTS:231274

GDB:451604 (e-PCR)
- UniSTS:157324

MARC_31601-31602:1045759847:1 (e-PCR)
- UniSTS:269206

ksks443 (e-PCR)
- UniSTS:514501

ksks444 (e-PCR)
- UniSTS:514502

ksks445 (e-PCR)
- UniSTS:514503

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein heterodimerization activity	IEA Inferred from Electronic Annotation more info	PubMed
enables structural constituent of chromatin	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of nucleosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: histone H2A.Z

Names: H2A histone family, member Z

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.