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ZFP90 ZFP90 zinc finger protein [ Bos taurus (domestic cattle) ]

Gene ID: 100139934, updated on 4-Oct-2024

Summary

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Official Symbol
ZFP90provided by VGNC
Official Full Name
ZFP90 zinc finger proteinprovided by VGNC
Primary source
VGNC:VGNC:37169
See related
Ensembl:ENSBTAG00000007488
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See ZFP90 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (35875676..35905974)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101907242 Neighboring gene sphingomyelin phosphodiesterase 3 Neighboring gene HIG1 domain family member 1A, mitochondrial-like Neighboring gene cadherin 3 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene transfer RNA glycine (anticodon UCC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC134475

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 90 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    35875676..35905974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059877473.1 → XP_059733456.1  zinc finger protein 90 homolog isoform X2

    Related
    ENSBTAP00000084344.1, ENSBTAT00000112671.1

  2. XM_059877474.1 → XP_059733457.1  zinc finger protein 90 homolog isoform X2

  3. XM_005218864.5 → XP_005218921.1  zinc finger protein 90 homolog isoform X1

    See identical proteins and their annotated locations for XP_005218921.1

    UniProtKB/TrEMBL
    A0AAA9SES3
    Related
    ENSBTAP00000082342.1, ENSBTAT00000128955.1
    Conserved Domains (6) summary
    smart00349
    Location:39 → 99
    KRAB; krueppel associated box
    COG5048
    Location:359 → 656
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:39 → 78
    KRAB; KRAB box
    pfam13465
    Location:563 → 588
    zf-H2C2_2; Zinc-finger double domain

  4. XM_002694906.6 → XP_002694952.2  zinc finger protein 90 homolog isoform X2

    See identical proteins and their annotated locations for XP_002694952.2

    UniProtKB/TrEMBL
    E1B960
    Conserved Domains (6) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:334 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:554 → 574
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:608 → 630
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:538 → 563
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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