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PKD1L3 polycystin 1 like 3, transient receptor potential channel interacting [ Bos taurus (cattle) ]

Gene ID: 100138604, updated on 6-Jun-2024

Summary

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Official Symbol
PKD1L3provided by VGNC
Official Full Name
polycystin 1 like 3, transient receptor potential channel interactingprovided by VGNC
Primary source
VGNC:VGNC:32934
See related
Ensembl:ENSBTAG00000019884
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See PKD1L3 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (39085074..39163776)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene haptoglobin Neighboring gene uncharacterized LOC107133343 Neighboring gene dihydroorotate dehydrogenase (quinone) Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene IST1 factor associated with ESCRT-III Neighboring gene microRNA mir-2328 Neighboring gene zinc finger protein 821 Neighboring gene U6 spliceosomal RNA Neighboring gene ataxin 1 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystic kidney disease protein 1-like 3; LOW QUALITY PROTEIN: polycystin-1-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    39085074..39163776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059877311.1 → XP_059733294.1  LOW QUALITY PROTEIN: polycystin-1-like protein 3

    UniProtKB/TrEMBL
    A0AAA9TDZ1
    Related
    ENSBTAP00000026493.6, ENSBTAT00000026493.6
Nucleotide Protein Strain
Heading Accession and Version

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