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CHAMP1 chromosome alignment maintaining phosphoprotein 1 [ Bos taurus (domestic cattle) ]

Gene ID: 100137827, updated on 10-Oct-2024

Summary

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Official Symbol
CHAMP1provided by VGNC
Official Full Name
chromosome alignment maintaining phosphoprotein 1provided by VGNC
Primary source
VGNC:VGNC:27268
See related
BGD:BT22874; Ensembl:ENSBTAG00000020861
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ZNF828
Orthologs
human mouse all
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Genomic context

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See CHAMP1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (87088091..87097222)

Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 16 Neighboring gene microRNA mir-2303 Neighboring gene UPF3A regulator of nonsense mediated mRNA decay Neighboring gene olfactory receptor family 5 subfamily M member 9K, pseudogene Neighboring gene olfactory receptor family 8 subfamily U member 30, pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in attachment of mitotic spindle microtubules to kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sister chromatid biorientation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromosome alignment-maintaining phosphoprotein 1
Names
zinc finger protein 828

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205506.2 → NP_001192435.1  chromosome alignment-maintaining phosphoprotein 1

    See identical proteins and their annotated locations for NP_001192435.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000012
    UniProtKB/TrEMBL
    A0AAA9SEB0, A0AAA9T9D3
    Conserved Domains (2) summary
    sd00017
    Location:732 → 752
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl26464
    Location:127 → 637
    Atrophin-1; Atrophin-1 family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    87088091..87097222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024999776.2 → XP_024855544.1  chromosome alignment-maintaining phosphoprotein 1 isoform X2

    UniProtKB/TrEMBL
    A0AAA9SEB0, A0AAA9T9D3
    Conserved Domains (2) summary
    sd00017
    Location:732 → 752
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl26464
    Location:127 → 637
    Atrophin-1; Atrophin-1 family

  2. XM_005213976.5 → XP_005214033.1  chromosome alignment-maintaining phosphoprotein 1 isoform X2

    See identical proteins and their annotated locations for XP_005214033.1

    UniProtKB/TrEMBL
    A0AAA9SEB0, A0AAA9T9D3
    Related
    ENSBTAP00000081926.1, ENSBTAT00000134433.1
    Conserved Domains (2) summary
    sd00017
    Location:732 → 752
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl26464
    Location:127 → 637
    Atrophin-1; Atrophin-1 family

  3. XM_024999775.2 → XP_024855543.1  chromosome alignment-maintaining phosphoprotein 1 isoform X2

    UniProtKB/TrEMBL
    A0AAA9SEB0, A0AAA9T9D3
    Conserved Domains (2) summary
    sd00017
    Location:732 → 752
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl26464
    Location:127 → 637
    Atrophin-1; Atrophin-1 family

  4. XM_059891952.1 → XP_059747935.1  chromosome alignment-maintaining phosphoprotein 1 isoform X1

    UniProtKB/TrEMBL
    F1MFQ9
    Related
    ENSBTAP00000027794.5, ENSBTAT00000027794.6
Nucleotide Protein Strain
Heading Accession and Version

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