U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rsl1d1.L ribosomal L1 domain containing 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100137646, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
rsl1d1.L
Official Full Name
ribosomal L1 domain containing 1 L homeolog
Primary source
Xenbase:XB-GENE-5886817
Locus tag
XELAEV_18045175mg
See related
EnsemblRapid:ENSXLAG00005014946 AllianceGenome:Xenbase:XB-GENE-5886817
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rsl1d1
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within maturation of LSU-rRNA. Predicted to be part of 90S preribosome and cytosolic large ribosomal subunit. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rsl1d1.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (101683582..101693004)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (91105300..91114669)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene THUMP domain containing 1 L homeolog Neighboring gene NADH:ubiquinone oxidoreductase subunit B7 L homeolog Neighboring gene RRN3 homolog, RNA polymerase I transcription factor L homeolog Neighboring gene N-terminal asparagine amidase L homeolog Neighboring gene pyridoxal-dependent decarboxylase domain containing 1 L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within maturation of LSU-rRNA IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ribosomal L1 domain containing 1 L homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114795.1 → NP_001108267.1  ribosomal L1 domain containing 1 L homeolog

    See identical proteins and their annotated locations for NP_001108267.1

    Status: PROVISIONAL

    Source sequence(s)
    BC157448
    UniProtKB/TrEMBL
    A9ULY3
    Conserved Domains (1) summary
    pfam00687
    Location:18 → 238
    Ribosomal_L1; Ribosomal protein L1p/L10e family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    101683582..101693004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575432.1 → XP_041431366.1  ribosomal L1 domain containing 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8EXL6, A0A974C069
    Related
    ENSXLAP00005043768.1, ENSXLAT00005044839.1
    Conserved Domains (1) summary
    pfam00687
    Location:21 → 237
    Ribosomal_L1; Ribosomal protein L1p/L10e family

  2. XM_041575434.1 → XP_041431368.1  ribosomal L1 domain containing 1 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1LP69
    Conserved Domains (1) summary
    cd00403
    Location:22 → 159
    Ribosomal_L1; Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds ...

  3. XM_041575433.1 → XP_041431367.1  ribosomal L1 domain containing 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LP96
    Conserved Domains (1) summary
    cd00403
    Location:8 → 198
    Ribosomal_L1; Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.