U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

fnta.S farnesyltransferase, CAAX box, subunit alpha S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100137632, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
fnta.S
Official Full Name
farnesyltransferase, CAAX box, subunit alpha S homeolog
Primary source
Xenbase:XB-GENE-865915
Locus tag
XELAEV_18009694mg
See related
EnsemblRapid:ENSXLAG00005028849 AllianceGenome:Xenbase:XB-GENE-865915
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fnta; fpta; ptar2; pggt1a; FTase-alpha
Summary
Predicted to enable CAAX-protein geranylgeranyltransferase activity and protein farnesyltransferase activity. Predicted to act upstream of or within protein farnesylation and protein geranylgeranylation. Predicted to be located in cytoplasm. Predicted to be part of CAAX-protein geranylgeranyltransferase complex and protein farnesyltransferase complex. Orthologous to human FNTA (farnesyltransferase, CAAX box, subunit alpha). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See fnta.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (86223784..86237108)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (81069730..81083082)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 3 S homeolog Neighboring gene uncharacterized LOC121399359 Neighboring gene thymosin beta-10 Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 1 S homeolog Neighboring gene SH2 domain containing 4A S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables CAAX-protein geranylgeranyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein farnesyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein farnesylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein geranylgeranylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein prenylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of CAAX-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of protein farnesyltransferase complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
farnesyltransferase, CAAX box, subunit alpha S homeolog
Names
farnesyltransferase, CAAX box, alpha S homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114783.1 → NP_001108255.1  farnesyltransferase, CAAX box, subunit alpha S homeolog

    See identical proteins and their annotated locations for NP_001108255.1

    Status: PROVISIONAL

    Source sequence(s)
    BC157425
    UniProtKB/TrEMBL
    A0A974DU28, A9ULW7
    Related
    ENSXLAP00005086123.1, ENSXLAT00005087785.1
    Conserved Domains (2) summary
    PLN02789
    Location:59 → 351
    PLN02789; farnesyltranstransferase
    pfam01239
    Location:178 → 204
    PPTA; Protein prenyltransferase alpha subunit repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    86223784..86237108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.