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sp2.L Sp2 transcription factor L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100137620, updated on 4-Nov-2024

Summary

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Official Symbol
sp2.L
Official Full Name
Sp2 transcription factor L homeolog
Primary source
Xenbase:XB-GENE-17342097
Locus tag
XELAEV_18043211mg
See related
EnsemblRapid:ENSXLAG00005029817 AllianceGenome:Xenbase:XB-GENE-17342097
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Orthologous to human SP2 (Sp2 transcription factor). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See sp2.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (3200237..3212180)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (3167922..3179811)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 46 Neighboring gene Sp6 transcription factor L homeolog Neighboring gene uncharacterized XB5788060 L homeolog Neighboring gene proline rich 15-like L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100137620

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114774.1 → NP_001108246.1  uncharacterized protein LOC100137620

    See identical proteins and their annotated locations for NP_001108246.1

    Status: PREDICTED

    Source sequence(s)
    BC130163
    UniProtKB/TrEMBL
    A0A974BS97, A0A974BWA4, A2BDB4
    Related
    ENSXLAP00005089308.1, ENSXLAT00005090976.1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    3200237..3212180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018233920.2 → XP_018089409.1  uncharacterized protein LOC100137620 isoform X3

    UniProtKB/TrEMBL
    A0A1L8ES68, A0A974BS97, A0A974BW80
    Related
    ENSXLAP00005089368.1, ENSXLAT00005091038.1

  2. XM_018233921.2 → XP_018089410.1  uncharacterized protein LOC100137620 isoform X1

    UniProtKB/TrEMBL
    A0A8J0TQ93, A0A974BS97
    Related
    ENSXLAP00005089133.1, ENSXLAT00005090802.1

  3. XM_018233919.2 → XP_018089408.1  uncharacterized protein LOC100137620 isoform X2

    UniProtKB/TrEMBL
    A0A974BS97, A0A974BWA4, A2BDB4
    Related
    ENSXLAP00005089110.1, ENSXLAT00005090780.1
Nucleotide Protein Strain
Heading Accession and Version

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