U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100136736 tubulin alpha chain, testis-specific [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100136736, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100136736
Gene description
tubulin alpha chain, testis-specific
See related
Ensembl:ENSOMYG00000044590
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100136736 in Genome Data Viewer
Location:
chromosome: Y
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) Y NC_048593.1 (11232998..11236337, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 29 NC_035105.1 (10320946..10324276, complement)

Chromosome Y - NC_048593.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha chain, testis-specific-like Neighboring gene uncharacterized LOC118945263 Neighboring gene polyubiquitin Neighboring gene seizure 6-like protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The predicted protein sequence of a fish testis-specific alpha-tubulin cDNA shows conservation of isotype-specific amino acid substitutions. Garber AT, et al. DNA Seq, 1991. PMID 1802035
  2. Combining next-generation sequencing with microarray for transcriptome analysis in rainbow trout gonads. Hayashi M, et al. Mol Reprod Dev, 2012 Dec. PMID 23109217
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tubulin alpha chain, testis-specific

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124691.1 → NP_001118163.1  tubulin alpha chain, testis-specific

    See identical proteins and their annotated locations for NP_001118163.1

    Status: PROVISIONAL

    Source sequence(s)
    M36623
    UniProtKB/Swiss-Prot
    P18288
    UniProtKB/TrEMBL
    A0A8C7UDK9
    Related
    ENSOMYP00000098167.1, ENSOMYT00000106599.2
    Conserved Domains (1) summary
    PTZ00335
    Location:1 → 440
    PTZ00335; tubulin alpha chain; Provisional

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048593.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    11232998..11236337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P18288.1 GenPept UniProtKB/Swiss-Prot:P18288

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials