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LOC100136352 beta actin [ Salmo salar (Atlantic salmon) ]

Gene ID: 100136352, updated on 18-Aug-2023

Summary

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Gene symbol
LOC100136352
Gene description
beta actin
See related
Ensembl:ENSSSAG00000116649
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
actb; beta-actin
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Genomic context

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Location:
chromosome: ssa03
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa03 NC_059444.1 (101422407..101427320)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa03 NC_027302.1 (92389729..92396132)

Chromosome ssa03 - NC_059444.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 216 Neighboring gene fascin-like Neighboring gene trinucleotide repeat-containing gene 18 protein Neighboring gene solute carrier family 29 member 4a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Different Relationship between hsp70 mRNA and hsp70 Levels in the Heat Shock Response of Two Salmonids with Dissimilar Temperature Preference. Lewis M, et al. Front Physiol, 2016. PMID 27872596, Free PMC Article
  2. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  3. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
actin, cytoplasmic 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123525.1 → NP_001116997.1  actin, cytoplasmic 1

    See identical proteins and their annotated locations for NP_001116997.1

    Status: PROVISIONAL

    Source sequence(s)
    AF012125
    UniProtKB/Swiss-Prot
    O42161
    UniProtKB/TrEMBL
    B5X240, B5X872
    Conserved Domains (1) summary
    PTZ00281
    Location:1 → 375
    PTZ00281; actin; Provisional

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059444.1 Reference Ssal_v3.1

    Range
    101422407..101427320
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014194536.2 → XP_014050011.1  actin, cytoplasmic 1 isoform X1

    UniProtKB/Swiss-Prot
    O42161
    UniProtKB/TrEMBL
    B5X240, B5X872
    Related
    ENSSSAP00000003515.2, ENSSSAT00000003752.2
    Conserved Domains (1) summary
    PTZ00281
    Location:1 → 375
    PTZ00281; actin; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O42161.1 GenPept UniProtKB/Swiss-Prot:O42161

Gene LinkOut

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