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LOC100135856 alpha 2,8-polysialyltransferase IIb [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100135856, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100135856
Gene description
alpha 2,8-polysialyltransferase IIb
See related
Ensembl:ENSOMYG00000026195
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC100135856 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 2 NC_048566.1 (72070481..72090783, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 2 NC_035078.1 (56517714..56537001, complement)

Chromosome 2 - NC_048566.1Genomic Context describing neighboring genes Neighboring gene chromodomain-helicase-DNA-binding protein 2 Neighboring gene uncharacterized LOC110495604 Neighboring gene solute carrier organic anion transporter family member 3A1 Neighboring gene ras-related and estrogen-regulated growth inhibitor-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of the alpha2,8-polysialyltransferases II/STX and IV/PST in the biosynthesis of polysialic acid chains on the O-linked glycoproteins in rainbow trout ovary. Asahina S, et al. J Biochem, 2006 Nov. PMID 17023684

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha 2,8-polysialyltransferase IIb
Names
ST8Sia IIb

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124241.2 → NP_001117713.1  alpha 2,8-polysialyltransferase IIb

    See identical proteins and their annotated locations for NP_001117713.1

    Status: PROVISIONAL

    Source sequence(s)
    AB262977
    UniProtKB/TrEMBL
    A0A060WFH6, A0PAB3
    Related
    ENSOMYP00000056764.2, ENSOMYT00000061804.2
    Conserved Domains (1) summary
    pfam00777
    Location:112 → 371
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048566.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    72070481..72090783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036990293.1 → XP_036846188.1  alpha 2,8-polysialyltransferase IIb isoform X1

    UniProtKB/TrEMBL
    A0A8C7RXR3
    Related
    ENSOMYP00000056750.2, ENSOMYT00000061790.2
    Conserved Domains (1) summary
    pfam00777
    Location:93 → 352
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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