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st8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100135820, updated on 12-Sep-2024

Summary

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Gene symbol
st8sia4
Gene description
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
See related
Ensembl:ENSOMYG00000004601
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See st8sia4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 5 NC_048569.1 (9659812..9677491)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 5 NC_035081.1 (7251221..7268575)

Chromosome 5 - NC_048569.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118964558 Neighboring gene peptidylglycine alpha-amidating monooxygenase Neighboring gene uncharacterized LOC118964744 Neighboring gene transmembrane protein 217 Neighboring gene small nucleolar RNA SNORA53 Neighboring gene chromodomain helicase DNA binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase
Names
ST8Sia IV
alpha-2,8-polysialyltransferase IV
NP_001117688.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124216.1 → NP_001117688.1  CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase

    See identical proteins and their annotated locations for NP_001117688.1

    Status: PROVISIONAL

    Source sequence(s)
    AB094402
    UniProtKB/TrEMBL
    A0A8C7NKJ5, Q7T2X5
    Related
    ENSOMYP00000009074.2, ENSOMYT00000010056.2
    Conserved Domains (1) summary
    pfam00777
    Location:92 → 351
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048569.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    9659812..9677491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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