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gh18 chitinase [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100135776, updated on 21-Dec-2023

Summary

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Gene symbol
gh18
Gene description
chitinase
See related
Ensembl:ENSCING00000016570
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
cht; Ci-GH18
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Genomic context

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See gh18 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190359.2 (168265..174720, complement)

NW_004190359.2Genomic Context describing neighboring genes Neighboring gene protein Simiate-like Neighboring gene desmoplakin-like Neighboring gene tubulin alpha chain, testis-specific Neighboring gene pentatricopeptide repeat-containing protein 1, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004190359 Unplaced Scaffold Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. New paralogues and revised time line in the expansion of the vertebrate GH18 family. Hussain M, et al. J Mol Evol, 2013 Apr. PMID 23558346
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114627.1 → NP_001108099.1  chitinase precursor

    See identical proteins and their annotated locations for NP_001108099.1

    Status: PROVISIONAL

    Source sequence(s)
    AB353142
    UniProtKB/TrEMBL
    A0A1W2VPJ3, A7BK23
    Related
    ENSCINP00000028628, ENSCINT00000028874
    Conserved Domains (3) summary
    cd02872
    Location:41 → 404
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00636
    Location:42 → 384
    Glyco_18; Glyco_18 domain
    pfam01607
    Location:500 → 551
    CBM_14; Chitin binding Peritrophin-A domain

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NW_004190359.2 Reference KH Primary Assembly

    Range
    168265..174720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
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